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(C)omplete (S)chedule Coverage Upset Plot

Source: R/cs_upsetplot.R
cs_upsetplot.Rd

Generates an UpSet plot showing the number of individuals who received various combinations of vaccine doses defined in a vaccination schedule, for a given birth cohort. Individuals with a complete schedule are highlighted.

Usage

cs_upsetplot(
  data.EIR,
  data.schedule,
  birth_cohort,
  denominator = NULL,
  min_size = 1
)

Arguments

data.EIR

A data frame containing individual vaccination records. See pahoabc.EIR for expected structure.

data.schedule

A data frame defining the vaccination schedule. See pahoabc.schedule for expected structure.

birth_cohort

Numeric. A single birth year for which to calculate and visualize coverage.

denominator

The denominator to use. If NULL (default), then the number of unique IDs in data.EIR is used.

min_size

The minimum number of doses (as a percentage of the denominator) a group has to have in order to be shown in the plot. Default is 1 percent.

Value

A ComplexUpset plot.