(R)esidence or (Oc)currence Coverage — roc_coverage

Calculates vaccine coverage by either residence or occurrence at a specified geographic level, for a set of years and vaccines.

Usage

roc_coverage_by(
  coverage_type,
  data.EIR,
  data.schedule,
  data.pop,
  geo_level,
  years = NULL,
  vaccines = NULL
)

coverage_type: A character string specifying the type of analysis: either "residence" or "occurrence".
data.EIR: A data frame containing individual vaccination records. See pahoabc.EIR for expected structure.
data.schedule: A data frame defining the vaccination schedule. See pahoabc.schedule for expected structure.
data.pop: A data frame with population denominators. See pahoabc.pop.ADMX for structure examples.
geo_level: The geographic level to aggregate results by. Must be "ADM0", "ADM1" or "ADM2". data.pop must contain the columns to match.
years: Numeric (optional). The years for which the coverage calculation is done. If NULL (default), all vaccination years in data.EIR are included.
vaccines: Character (optional). A character vector specifying the doses to include in the analysis. If NULL (default), all vaccines in data.EIR are included.

A data frame with calculated coverage for the specified analysis type, year, vaccines, and geographic level.